IL_4V5K_071

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_071 not in the Motif Atlas

Geometric match to IL_7RQB_015

Geometric discrepancy: 0.0678

The information below is about IL_7RQB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

4V5K|1|BA|C|564
4V5K|1|BA|C|565
4V5K|1|BA|U|566
*
4V5K|1|BA|A|575
4V5K|1|BA|U|576
4V5K|1|BA|G|577

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BP

50S RIBOSOMAL PROTEIN L15

Chain BU

50S RIBOSOMAL PROTEIN L20

Chain BV

50S RIBOSOMAL PROTEIN L21