IL_4V5K_094

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

4V5K|1|BA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_094 not in the Motif Atlas

Geometric match to IL_7RQB_038

Geometric discrepancy: 0.1145

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

4V5K|1|BA|G|1011
4V5K|1|BA|U|1012
4V5K|1|BA|C|1013
*
4V5K|1|BA|G|1149
4V5K|1|BA|C|1150

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BN

50S RIBOSOMAL PROTEIN L13

Chain BU

50S RIBOSOMAL PROTEIN L20