IL_4V5K_169

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_169 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1102

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V5K|1|CA|C|132
4V5K|1|CA|U|133
4V5K|1|CA|A|134
4V5K|1|CA|C|135
4V5K|1|CA|C|136
*
4V5K|1|CA|G|227
4V5K|1|CA|A|228
4V5K|1|CA|U|229
4V5K|1|CA|G|230

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16

Chain CT

30S RIBOSOMAL PROTEIN S20