IL_4V5K_189

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_189 not in the Motif Atlas

Geometric match to IL_7A0S_041

Geometric discrepancy: 0.3793

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

4V5K|1|CA|C|656
4V5K|1|CA|G|657
4V5K|1|CA|G|658
*
4V5K|1|CA|C|747
4V5K|1|CA|C|748
4V5K|1|CA|C|749
4V5K|1|CA|G|750

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CO

30S RIBOSOMAL PROTEIN S15