IL_4V5K_206

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGCCACCC*GGGGAGCUAAUCG

Length

24 nucleotides

Bulged bases

4V5K|1|CA|U|1257, 4V5K|1|CA|A|1280, 4V5K|1|CA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|CA|C|1254
4V5K|1|CA|G|1255
4V5K|1|CA|A|1256
4V5K|1|CA|U|1257
4V5K|1|CA|G|1258
4V5K|1|CA|C|1259
4V5K|1|CA|C|1260
4V5K|1|CA|A|1261
4V5K|1|CA|C|1262
4V5K|1|CA|C|1263
4V5K|1|CA|C|1264
*
4V5K|1|CA|G|1271
4V5K|1|CA|G|1272
4V5K|1|CA|G|1273
4V5K|1|CA|G|1274
4V5K|1|CA|A|1275
4V5K|1|CA|G|1276
4V5K|1|CA|C|1277
4V5K|1|CA|U|1278
4V5K|1|CA|A|1279
4V5K|1|CA|A|1280
4V5K|1|CA|U|1281
4V5K|1|CA|C|1282
4V5K|1|CA|G|1283

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S RIBOSOMAL PROTEIN S3

Chain CJ

30S RIBOSOMAL PROTEIN S10

Chain CN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain CS

30S RIBOSOMAL PROTEIN S19

Chain CU

30S RIBOSOMAL PROTEIN THX