IL_4V5K_210

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUCAC*GA(A3P)GUC

Length

11 nucleotides

Bulged bases

4V5K|1|CA|A|1492

QA status

Modified nucleotides: A3P

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|CA|G|1405
4V5K|1|CA|U|1406
4V5K|1|CA|C|1407
4V5K|1|CA|A|1408
4V5K|1|CA|C|1409
*
4V5K|1|CA|G|1491
4V5K|1|CA|A|1492
4V5K|1|CA|A3P|1493
4V5K|1|CA|G|1494
4V5K|1|CA|U|1495
4V5K|1|CA|C|1496

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CX

MRNA

Chain CY

COLICIN-E3

Chain DA

Large subunit ribosomal RNA; LSU rRNA