IL_4V5K_228

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_228 not in the Motif Atlas

Homologous match to IL_7RQB_013

Geometric discrepancy: 0.0733

The information below is about IL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

4V5K|1|DA|U|293
4V5K|1|DA|A|294
4V5K|1|DA|G|295
*
4V5K|1|DA|C|343
4V5K|1|DA|G|344
4V5K|1|DA|A|345
4V5K|1|DA|A|346
4V5K|1|DA|A|347

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DY

50S RIBOSOMAL PROTEIN L24