IL_4V5K_265

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_265 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.2141

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V5K|1|DA|U|1357
4V5K|1|DA|G|1358
4V5K|1|DA|A|1359
4V5K|1|DA|A|1360
4V5K|1|DA|G|1361
*
4V5K|1|DA|C|1370
4V5K|1|DA|G|1371
4V5K|1|DA|U|1372
4V5K|1|DA|A|1373
4V5K|1|DA|G|1374

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S RIBOSOMAL PROTEIN L28

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DD

50S RIBOSOMAL PROTEIN L2