IL_4V5K_272

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGGGA*UCCCAACAAG

Length

15 nucleotides

Bulged bases

4V5K|1|DA|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|DA|U|1481
4V5K|1|DA|G|1482
4V5K|1|DA|G|1484
4V5K|1|DA|G|1485
4V5K|1|DA|A|1486
*
4V5K|1|DA|U|1503
4V5K|1|DA|C|1504
4V5K|1|DA|C|1505
4V5K|1|DA|C|1506
4V5K|1|DA|A|1507
4V5K|1|DA|A|1508
4V5K|1|DA|C|1509
4V5K|1|DA|A|1509|||A
4V5K|1|DA|A|1509|||B
4V5K|1|DA|G|1510

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S RIBOSOMAL PROTEIN L2