IL_4V5K_326

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCCGCGAGGGGAGCCCUAGCACAGG*CCUUACG

Length

71 nucleotides

Bulged bases

4V5K|1|AA|G|1001|||A, 4V5K|1|AA|A|1005, 4V5K|1|AA|U|1025, 4V5K|1|AA|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|AA|C|990
4V5K|1|AA|U|991
4V5K|1|AA|U|992
4V5K|1|AA|G|993
4V5K|1|AA|A|994
4V5K|1|AA|C|995
4V5K|1|AA|A|996
4V5K|1|AA|U|997
4V5K|1|AA|G|998
4V5K|1|AA|C|999
4V5K|1|AA|U|1000
4V5K|1|AA|A|1001
4V5K|1|AA|G|1001|||A
4V5K|1|AA|G|1002
4V5K|1|AA|G|1003
4V5K|1|AA|A|1004
4V5K|1|AA|A|1005
4V5K|1|AA|C|1006
4V5K|1|AA|C|1007
4V5K|1|AA|C|1008
4V5K|1|AA|G|1009
4V5K|1|AA|G|1010
4V5K|1|AA|G|1011
4V5K|1|AA|U|1012
4V5K|1|AA|G|1013
4V5K|1|AA|A|1014
4V5K|1|AA|A|1015
4V5K|1|AA|A|1016
4V5K|1|AA|G|1017
4V5K|1|AA|C|1018
4V5K|1|AA|C|1019
4V5K|1|AA|U|1020
4V5K|1|AA|G|1021
4V5K|1|AA|G|1022
4V5K|1|AA|G|1023
4V5K|1|AA|G|1024
4V5K|1|AA|U|1025
4V5K|1|AA|G|1026
4V5K|1|AA|C|1027
4V5K|1|AA|C|1028
4V5K|1|AA|C|1029
4V5K|1|AA|C|1030
4V5K|1|AA|G|1030|||A
4V5K|1|AA|C|1030|||B
4V5K|1|AA|G|1030|||C
4V5K|1|AA|A|1030|||D
4V5K|1|AA|G|1031
4V5K|1|AA|G|1032
4V5K|1|AA|G|1033
4V5K|1|AA|G|1034
4V5K|1|AA|A|1035
4V5K|1|AA|G|1036
4V5K|1|AA|C|1037
4V5K|1|AA|C|1038
4V5K|1|AA|C|1039
4V5K|1|AA|U|1040
4V5K|1|AA|A|1041
4V5K|1|AA|G|1042
4V5K|1|AA|C|1043
4V5K|1|AA|A|1044
4V5K|1|AA|C|1045
4V5K|1|AA|A|1046
4V5K|1|AA|G|1047
4V5K|1|AA|G|1048
*
4V5K|1|AA|C|1209
4V5K|1|AA|C|1210
4V5K|1|AA|U|1211
4V5K|1|AA|U|1212
4V5K|1|AA|A|1213
4V5K|1|AA|C|1214
4V5K|1|AA|G|1215

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain AS

30S RIBOSOMAL PROTEIN S19

Chain DA

Large subunit ribosomal RNA; LSU rRNA