IL_4V5K_333
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGU*GACG
- Length
- 7 nucleotides
- Bulged bases
- 4V5K|1|CA|A|397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5K_333 not in the Motif Atlas
- Geometric match to IL_4V88_455
- Geometric discrepancy: 0.2411
- The information below is about IL_4V88_455
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4V5K|1|CA|C|43
4V5K|1|CA|G|44
4V5K|1|CA|U|45
*
4V5K|1|CA|G|396
4V5K|1|CA|A|397
4V5K|1|CA|C|398
4V5K|1|CA|G|399
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CD
- 30S RIBOSOMAL PROTEIN S4
- Chain CP
- 30S RIBOSOMAL PROTEIN S16
Coloring options: