IL_4V5K_333

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGU*GACG

Length

7 nucleotides

Bulged bases

4V5K|1|CA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_333 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.2411

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V5K|1|CA|C|43
4V5K|1|CA|G|44
4V5K|1|CA|U|45
*
4V5K|1|CA|G|396
4V5K|1|CA|A|397
4V5K|1|CA|C|398
4V5K|1|CA|G|399

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S RIBOSOMAL PROTEIN S4

Chain CP

30S RIBOSOMAL PROTEIN S16