IL_4V5K_335
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGC*GC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5K_335 not in the Motif Atlas
- Homologous match to IL_6CZR_407
- Geometric discrepancy: 0.1462
- The information below is about IL_6CZR_407
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.5
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 44
Unit IDs
4V5K|1|CA|G|594
4V5K|1|CA|G|595
4V5K|1|CA|C|596
*
4V5K|1|CA|G|644
4V5K|1|CA|C|645
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CH
- 30S RIBOSOMAL PROTEIN S8
- Chain CQ
- 30S RIBOSOMAL PROTEIN S17
Coloring options: