IL_4V5K_364

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAUGGGAG*UGACUGGGG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|CA|C|1411
4V5K|1|CA|C|1412
4V5K|1|CA|A|1413
4V5K|1|CA|U|1414
4V5K|1|CA|G|1415
4V5K|1|CA|G|1416
4V5K|1|CA|G|1417
4V5K|1|CA|A|1418
4V5K|1|CA|G|1419
*
4V5K|1|CA|U|1481
4V5K|1|CA|G|1482
4V5K|1|CA|A|1483
4V5K|1|CA|C|1484
4V5K|1|CA|U|1485
4V5K|1|CA|G|1486
4V5K|1|CA|G|1487
4V5K|1|CA|G|1488
4V5K|1|CA|G|1489

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CY

COLICIN-E3

Chain DA

Large subunit ribosomal RNA; LSU rRNA