IL_4V5K_368

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5K_368 not in the Motif Atlas

Homologous match to IL_4WF9_126

Geometric discrepancy: 0.237

The information below is about IL_4WF9_126

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

4V5K|1|DB|C|30
4V5K|1|DB|C|31
*
4V5K|1|DB|G|51
4V5K|1|DB|A|52
4V5K|1|DB|A|53
4V5K|1|DB|G|54

Current chains

Chain DB

5S ribosomal RNA

Nearby chains

Chain DG

50S RIBOSOMAL PROTEIN L5

Chain DS

50S RIBOSOMAL PROTEIN L18