IL_4V5L_009

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACAACC*GGCUAAUC

Length

15 nucleotides

Bulged bases

4V5L|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5L_009 not in the Motif Atlas

Homologous match to IL_6CZR_121

Geometric discrepancy: 0.1751

The information below is about IL_6CZR_121

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.5

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V5L|1|AA|G|148
4V5L|1|AA|A|149
4V5L|1|AA|C|150
4V5L|1|AA|A|151
4V5L|1|AA|A|152
4V5L|1|AA|C|153
4V5L|1|AA|C|154
*
4V5L|1|AA|G|167
4V5L|1|AA|G|168
4V5L|1|AA|C|169
4V5L|1|AA|U|170
4V5L|1|AA|A|171
4V5L|1|AA|A|172
4V5L|1|AA|U|173
4V5L|1|AA|C|174

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20