IL_4V5L_017

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGAAGC*GUGUAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5L_017 not in the Motif Atlas

Homologous match to IL_6CZR_129

Geometric discrepancy: 0.1737

The information below is about IL_6CZR_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58819.1

Basepair signature

cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V5L|1|AA|G|409
4V5L|1|AA|G|410
4V5L|1|AA|A|411
4V5L|1|AA|A|412
4V5L|1|AA|G|413
4V5L|1|AA|A|414
4V5L|1|AA|A|415
4V5L|1|AA|G|416
4V5L|1|AA|C|417
*
4V5L|1|AA|G|426
4V5L|1|AA|U|427
4V5L|1|AA|G|428
4V5L|1|AA|U|429
4V5L|1|AA|A|430
4V5L|1|AA|A|431
4V5L|1|AA|A|432
4V5L|1|AA|C|433

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AD

30S RIBOSOMAL PROTEIN S4