IL_4V5L_060

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AC*GGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5L_060 not in the Motif Atlas

Homologous match to IL_5WT1_001

Geometric discrepancy: 0.3112

The information below is about IL_5WT1_001

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

4V5L|1|AY|A|26
4V5L|1|AY|C|27
*
4V5L|1|AY|G|43
4V5L|1|AY|G|44
4V5L|1|AY|U|45

Current chains

Chain AY

A-SITE TRNA G24A TRP-TRNA TRP

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain BA

Large subunit ribosomal RNA; LSU rRNA