IL_4V5L_077

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V5L|1|BA|G|801, 4V5L|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5L_077 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.0884

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

4V5L|1|BA|G|674
4V5L|1|BA|A|675
4V5L|1|BA|A|676
4V5L|1|BA|A|677
4V5L|1|BA|C|678
*
4V5L|1|BA|G|799
4V5L|1|BA|A|800
4V5L|1|BA|G|801
4V5L|1|BA|A|802
4V5L|1|BA|U|803
4V5L|1|BA|A|804
4V5L|1|BA|G|805
4V5L|1|BA|C|806

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BP

50S RIBOSOMAL PROTEIN L15