IL_4V5L_090

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5L_090 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2543

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V5L|1|BA|G|875
4V5L|1|BA|C|876
4V5L|1|BA|U|877
4V5L|1|BA|A|878
4V5L|1|BA|G|879
*
4V5L|1|BA|C|898
4V5L|1|BA|A|899
4V5L|1|BA|A|900
4V5L|1|BA|A|901
4V5L|1|BA|C|902

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BQ

50S RIBOSOMAL PROTEIN L16

Chain BZ

50S RIBOSOMAL PROTEIN L25