IL_4V5N_095

3D structure

PDB id

4V5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4V5N|1|BA|U|1142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5N_095 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1307

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

4V5N|1|BA|C|1018
4V5N|1|BA|U|1019
4V5N|1|BA|A|1020
4V5N|1|BA|A|1021
4V5N|1|BA|G|1022
4V5N|1|BA|U|1023
4V5N|1|BA|G|1024
*
4V5N|1|BA|C|1140
4V5N|1|BA|U|1141
4V5N|1|BA|U|1142
4V5N|1|BA|A|1142|||A
4V5N|1|BA|A|1143
4V5N|1|BA|G|1144

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B9

50S RIBOSOMAL PROTEIN L36

Chain BH

50S RIBOSOMAL PROTEIN L6

Chain BN

50S RIBOSOMAL PROTEIN L13