IL_4V5P_080

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V5P|1|BA|G|801, 4V5P|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5P_080 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0793

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

4V5P|1|BA|G|674
4V5P|1|BA|A|675
4V5P|1|BA|A|676
4V5P|1|BA|A|677
4V5P|1|BA|C|678
*
4V5P|1|BA|G|799
4V5P|1|BA|A|800
4V5P|1|BA|G|801
4V5P|1|BA|A|802
4V5P|1|BA|U|803
4V5P|1|BA|A|804
4V5P|1|BA|G|805
4V5P|1|BA|C|806

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BP

50S RIBOSOMAL PROTEIN L15