IL_4V5P_190

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4V5P|1|CA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5P_190 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1218

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V5P|1|CA|G|409
4V5P|1|CA|G|410
4V5P|1|CA|A|411
4V5P|1|CA|A|412
4V5P|1|CA|G|413
4V5P|1|CA|A|414
4V5P|1|CA|A|415
4V5P|1|CA|G|416
*
4V5P|1|CA|U|427
4V5P|1|CA|G|428
4V5P|1|CA|U|429
4V5P|1|CA|A|430
4V5P|1|CA|A|431
4V5P|1|CA|A|432
4V5P|1|CA|C|433

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CD

30S RIBOSOMAL PROTEIN S4