IL_4V5P_192

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5P_192 not in the Motif Atlas

Geometric match to IL_6CZR_131

Geometric discrepancy: 0.1422

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V5P|1|CA|G|450
4V5P|1|CA|A|451
4V5P|1|CA|A|452
4V5P|1|CA|A|453
4V5P|1|CA|C|454
4V5P|1|CA|C|455
4V5P|1|CA|C|456
*
4V5P|1|CA|G|475
4V5P|1|CA|G|476
4V5P|1|CA|A|477
4V5P|1|CA|C|479
4V5P|1|CA|U|480
4V5P|1|CA|G|481
4V5P|1|CA|A|482
4V5P|1|CA|C|483

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16