IL_4V5P_279

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5P_279 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0576

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V5P|1|DA|A|1262
4V5P|1|DA|U|1263
4V5P|1|DA|G|1264
4V5P|1|DA|A|1265
4V5P|1|DA|G|1266
4V5P|1|DA|U|1267
4V5P|1|DA|A|1268
4V5P|1|DA|A|1269
*
4V5P|1|DA|U|2011
4V5P|1|DA|G|2012
4V5P|1|DA|A|2013
4V5P|1|DA|A|2014
4V5P|1|DA|A|2015
4V5P|1|DA|U|2016
4V5P|1|DA|U|2017

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D5

50S RIBOSOMAL PROTEIN L32

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DW

50S RIBOSOMAL PROTEIN L22