IL_4V5P_291

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4V5P|1|DA|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5P_291 not in the Motif Atlas

Geometric match to IL_9DFE_062

Geometric discrepancy: 0.378

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V5P|1|DA|G|1526
4V5P|1|DA|G|1527
4V5P|1|DA|A|1528
4V5P|1|DA|A|1528|||A
4V5P|1|DA|G|1529
*
4V5P|1|DA|U|1540
4V5P|1|DA|G|1541
4V5P|1|DA|A|1542
4V5P|1|DA|C|1543
4V5P|1|DA|A|1544
4V5P|1|DA|A|1545
4V5P|1|DA|C|1546

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains