IL_4V5P_378

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGCGAAGACAGCCA*UGGUCGAGUGG

Length

26 nucleotides

Bulged bases

4V5P|1|DA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5P|1|DA|C|1040
4V5P|1|DA|G|1041
4V5P|1|DA|G|1042
4V5P|1|DA|C|1043
4V5P|1|DA|G|1044
4V5P|1|DA|A|1045
4V5P|1|DA|A|1046
4V5P|1|DA|G|1047
4V5P|1|DA|A|1048
4V5P|1|DA|C|1049
4V5P|1|DA|A|1050
4V5P|1|DA|G|1051
4V5P|1|DA|C|1052
4V5P|1|DA|C|1053
4V5P|1|DA|A|1054
*
4V5P|1|DA|U|1105
4V5P|1|DA|G|1106
4V5P|1|DA|G|1107
4V5P|1|DA|U|1108
4V5P|1|DA|C|1109
4V5P|1|DA|G|1110
4V5P|1|DA|A|1111
4V5P|1|DA|G|1112
4V5P|1|DA|U|1113
4V5P|1|DA|G|1114
4V5P|1|DA|G|1115

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D9

50S RIBOSOMAL PROTEIN L36

Chain DH

50S RIBOSOMAL PROTEIN L6

Chain DJ

50S RIBOSOMAL PROTEIN L10

Chain DZ

50S RIBOSOMAL PROTEIN L25