IL_4V5Q_048

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Q_048 not in the Motif Atlas

Geometric match to IL_4LFB_053

Geometric discrepancy: 0.144

The information below is about IL_4LFB_053

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_58310.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

25

Unit IDs

4V5Q|1|AA|C|1259
4V5Q|1|AA|C|1260
*
4V5Q|1|AA|G|1274
4V5Q|1|AA|A|1275
4V5Q|1|AA|G|1276

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AU

30S RIBOSOMAL PROTEIN THX