IL_4V5Q_066
3D structure
- PDB id
- 4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5Q_066 not in the Motif Atlas
- Homologous match to IL_5J7L_250
- Geometric discrepancy: 0.0726
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V5Q|1|BA|G|188
4V5Q|1|BA|G|189
4V5Q|1|BA|A|190
4V5Q|1|BA|A|191
4V5Q|1|BA|C|192
4V5Q|1|BA|U|193
4V5Q|1|BA|G|194
*
4V5Q|1|BA|C|201
4V5Q|1|BA|U|202
4V5Q|1|BA|C|203
4V5Q|1|BA|A|204
4V5Q|1|BA|G|205
4V5Q|1|BA|U|206
4V5Q|1|BA|A|207
4V5Q|1|BA|C|208
Current chains
- Chain BA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B1
- 50S RIBOSOMAL PROTEIN L28
- Chain B7
- 50S RIBOSOMAL PROTEIN L34
- Chain B8
- 50S RIBOSOMAL PROTEIN L35
- Chain BP
- 50S RIBOSOMAL PROTEIN L15
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