3D structure

PDB id
4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
4V5Q|1|BA|U|1012
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5Q_098 not in the Motif Atlas
Homologous match to IL_5J7L_279
Geometric discrepancy: 0.1431
The information below is about IL_5J7L_279
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

4V5Q|1|BA|G|1011
4V5Q|1|BA|U|1012
4V5Q|1|BA|C|1013
*
4V5Q|1|BA|G|1149
4V5Q|1|BA|C|1150

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain BN
50S RIBOSOMAL PROTEIN L13
Chain BU
50S RIBOSOMAL PROTEIN L20

Coloring options:


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