IL_4V5Q_229

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AC*GGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Q_229 not in the Motif Atlas

Homologous match to IL_5WT1_001

Geometric discrepancy: 0.2213

The information below is about IL_5WT1_001

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

4V5Q|1|CY|A|26
4V5Q|1|CY|C|27
*
4V5Q|1|CY|G|43
4V5Q|1|CY|G|44
4V5Q|1|CY|U|45

Current chains

Chain CY

A-SITE TRNA G24A TRP-TRNA TRP

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain DA

Large subunit ribosomal RNA; LSU rRNA