IL_4V5Q_229
3D structure
- PDB id
- 4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GGU
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5Q_229 not in the Motif Atlas
- Homologous match to IL_5WT1_001
- Geometric discrepancy: 0.2213
- The information below is about IL_5WT1_001
- Detailed Annotation
- Stack outside cWW
- Broad Annotation
- Stack outside cWW
- Motif group
- IL_66635.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 27
Unit IDs
4V5Q|1|CY|A|26
4V5Q|1|CY|C|27
*
4V5Q|1|CY|G|43
4V5Q|1|CY|G|44
4V5Q|1|CY|U|45
Current chains
- Chain CY
- A-SITE TRNA G24A TRP-TRNA TRP
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CL
- 30S RIBOSOMAL PROTEIN S12
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: