IL_4V5Q_235

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Q_235 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0873

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V5Q|1|DA|U|239
4V5Q|1|DA|G|240
4V5Q|1|DA|A|241
4V5Q|1|DA|G|242
4V5Q|1|DA|U|243
4V5Q|1|DA|A|244
4V5Q|1|DA|G|245
*
4V5Q|1|DA|C|253
4V5Q|1|DA|G|254
4V5Q|1|DA|A|255
4V5Q|1|DA|A|256
4V5Q|1|DA|A|257
4V5Q|1|DA|G|258

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D8

50S RIBOSOMAL PROTEIN L35

Chain DP

50S RIBOSOMAL PROTEIN L15