IL_4V5Q_297

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Q_297 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.153

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V5Q|1|DA|U|1851
4V5Q|1|DA|C|1852
4V5Q|1|DA|A|1853
4V5Q|1|DA|A|1854
4V5Q|1|DA|G|1855
*
4V5Q|1|DA|C|1887
4V5Q|1|DA|G|1888
4V5Q|1|DA|A|1889
4V5Q|1|DA|A|1890
4V5Q|1|DA|G|1891

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain D1

50S RIBOSOMAL PROTEIN L28

Chain DD

50S RIBOSOMAL PROTEIN L2