IL_4V5Q_332
3D structure
- PDB id
- 4V5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCG*CAGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V5Q_332 not in the Motif Atlas
- Geometric match to IL_2ET8_003
- Geometric discrepancy: 0.3572
- The information below is about IL_2ET8_003
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_08770.1
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V5Q|1|DB|G|16
4V5Q|1|DB|C|17
4V5Q|1|DB|G|18
*
4V5Q|1|DB|C|65
4V5Q|1|DB|A|66
4V5Q|1|DB|G|67
4V5Q|1|DB|C|68
Current chains
- Chain DB
- 5S RIBOSOMAL RNA
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DS
- 50S RIBOSOMAL PROTEIN L18
- Chain DZ
- 50S RIBOSOMAL PROTEIN L25
Coloring options: