IL_4V5Q_354

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCUUGGUCGCGCCUGCGUAGGAUAG*CCCUGGCGCGGCUGGGG

Length

42 nucleotides

Bulged bases

4V5Q|1|BA|C|2103, 4V5Q|1|BA|C|2107, 4V5Q|1|BA|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5Q|1|BA|U|2096
4V5Q|1|BA|C|2097
4V5Q|1|BA|U|2098
4V5Q|1|BA|U|2099
4V5Q|1|BA|G|2100
4V5Q|1|BA|G|2101
4V5Q|1|BA|U|2102
4V5Q|1|BA|C|2103
4V5Q|1|BA|G|2104
4V5Q|1|BA|C|2105
4V5Q|1|BA|G|2106
4V5Q|1|BA|C|2107
4V5Q|1|BA|C|2108
4V5Q|1|BA|U|2109
4V5Q|1|BA|G|2110
4V5Q|1|BA|C|2111
4V5Q|1|BA|G|2112
4V5Q|1|BA|U|2113
4V5Q|1|BA|A|2114
4V5Q|1|BA|G|2115
4V5Q|1|BA|G|2116
4V5Q|1|BA|A|2117
4V5Q|1|BA|U|2118
4V5Q|1|BA|A|2119
4V5Q|1|BA|G|2120
*
4V5Q|1|BA|C|2177
4V5Q|1|BA|C|2178
4V5Q|1|BA|C|2179
4V5Q|1|BA|U|2180
4V5Q|1|BA|G|2181
4V5Q|1|BA|G|2182
4V5Q|1|BA|C|2183
4V5Q|1|BA|G|2184
4V5Q|1|BA|C|2185
4V5Q|1|BA|G|2186
4V5Q|1|BA|G|2187
4V5Q|1|BA|C|2188
4V5Q|1|BA|U|2189
4V5Q|1|BA|G|2190
4V5Q|1|BA|G|2191
4V5Q|1|BA|G|2192
4V5Q|1|BA|G|2193

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AK

30S RIBOSOMAL PROTEIN S11

Chain AW

Transfer RNA; tRNA

Chain BC

50S RIBOSOMAL PROTEIN L1

Chain BD

50S RIBOSOMAL PROTEIN L2