3D structure

PDB id
4V5R (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAUGC*GUAAG
Length
11 nucleotides
Bulged bases
4V5R|1|BA|U|1205
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5R_104 not in the Motif Atlas
Geometric match to IL_4V9F_056
Geometric discrepancy: 0.3287
The information below is about IL_4V9F_056
Detailed Annotation
tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_62654.1
Basepair signature
cWW-tSH-tHH-tHS-cWW
Number of instances in this motif group
1

Unit IDs

4V5R|1|BA|C|1202
4V5R|1|BA|G|1203
4V5R|1|BA|A|1204
4V5R|1|BA|U|1205
4V5R|1|BA|G|1206
4V5R|1|BA|C|1207
*
4V5R|1|BA|G|1239
4V5R|1|BA|U|1240
4V5R|1|BA|A|1241
4V5R|1|BA|A|1242
4V5R|1|BA|G|1243

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain BF
50S RIBOSOMAL PROTEIN L4
Chain BP
50S RIBOSOMAL PROTEIN L15

Coloring options:


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