IL_4V5R_117

3D structure

PDB id

4V5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5R_117 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.2033

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4V5R|1|BA|G|1450
4V5R|1|BA|C|1450|||A
4V5R|1|BA|C|1451
*
4V5R|1|BA|G|1461
4V5R|1|BA|C|1462

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BR

50S RIBOSOMAL PROTEIN L17