IL_4V5R_358

3D structure

PDB id

4V5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGGCGAAGACAGCCAG*CUGGUCGAGUGGC

Length

30 nucleotides

Bulged bases

4V5R|1|BA|C|1043, 4V5R|1|BA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5R|1|BA|G|1039
4V5R|1|BA|C|1040
4V5R|1|BA|G|1041
4V5R|1|BA|G|1042
4V5R|1|BA|C|1043
4V5R|1|BA|G|1044
4V5R|1|BA|A|1045
4V5R|1|BA|A|1046
4V5R|1|BA|G|1047
4V5R|1|BA|A|1048
4V5R|1|BA|C|1049
4V5R|1|BA|A|1050
4V5R|1|BA|G|1051
4V5R|1|BA|C|1052
4V5R|1|BA|C|1053
4V5R|1|BA|A|1054
4V5R|1|BA|G|1055
*
4V5R|1|BA|C|1104
4V5R|1|BA|U|1105
4V5R|1|BA|G|1106
4V5R|1|BA|G|1107
4V5R|1|BA|U|1108
4V5R|1|BA|C|1109
4V5R|1|BA|G|1110
4V5R|1|BA|A|1111
4V5R|1|BA|G|1112
4V5R|1|BA|U|1113
4V5R|1|BA|G|1114
4V5R|1|BA|G|1115
4V5R|1|BA|C|1116

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B9

50S RIBOSOMAL PROTEIN L36

Chain BH

50S RIBOSOMAL PROTEIN L6

Chain BJ

50S RIBOSOMAL PROTEIN L10

Chain BZ

50S RIBOSOMAL PROTEIN L25