IL_4V5R_370

3D structure

PDB id

4V5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5R_370 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.0979

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

4V5R|1|CA|C|1259
4V5R|1|CA|C|1260
4V5R|1|CA|A|1261
4V5R|1|CA|C|1262
*
4V5R|1|CA|G|1273
4V5R|1|CA|G|1274
4V5R|1|CA|A|1275
4V5R|1|CA|G|1276

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CU

30S RIBOSOMAL PROTEIN THX