3D structure

PDB id
4V5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUGUAG*CGAAGG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5S_086 not in the Motif Atlas
Geometric match to IL_7A0S_027
Geometric discrepancy: 0.1106
The information below is about IL_7A0S_027
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_81631.1
Basepair signature
cWW-L-R-cSH-R-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

4V5S|1|BA|C|857
4V5S|1|BA|U|858
4V5S|1|BA|G|859
4V5S|1|BA|U|860
4V5S|1|BA|A|861
4V5S|1|BA|G|862
*
4V5S|1|BA|C|915
4V5S|1|BA|G|916
4V5S|1|BA|A|917
4V5S|1|BA|A|918
4V5S|1|BA|G|919
4V5S|1|BA|G|920

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain B0
50S RIBOSOMAL PROTEIN L27
Chain B3
50S RIBOSOMAL PROTEIN L30
Chain BB
5S ribosomal RNA; 5S rRNA
Chain BQ
50S RIBOSOMAL PROTEIN L16

Coloring options:


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