IL_4V5S_111

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

4V5S|1|BA|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5S_111 not in the Motif Atlas

Geometric match to IL_4WF9_051

Geometric discrepancy: 0.3802

The information below is about IL_4WF9_051

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V5S|1|BA|C|1417
4V5S|1|BA|G|1418
4V5S|1|BA|A|1419
4V5S|1|BA|U|1420
4V5S|1|BA|G|1421
*
4V5S|1|BA|C|1577
4V5S|1|BA|U|1578
4V5S|1|BA|A|1579
4V5S|1|BA|A|1580
4V5S|1|BA|G|1581

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains