3D structure

PDB id
4V5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GU*GAC
Length
5 nucleotides
Bulged bases
4V5S|1|CA|A|397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5S_170 not in the Motif Atlas
Homologous match to IL_6CZR_114
Geometric discrepancy: 0.1116
The information below is about IL_6CZR_114
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

4V5S|1|CA|G|44
4V5S|1|CA|U|45
*
4V5S|1|CA|G|396
4V5S|1|CA|A|397
4V5S|1|CA|C|398

Current chains

Chain CA
16S RRNA

Nearby chains

Chain CP
30S RIBOSOMAL PROTEIN S16
Chain CZ
ELONGATION FACTOR TU

Coloring options:


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