3D structure

PDB id
4V5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5S_201 not in the Motif Atlas
Homologous match to IL_4LFB_033
Geometric discrepancy: 0.0899
The information below is about IL_4LFB_033
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

4V5S|1|CA|C|779
4V5S|1|CA|A|780
4V5S|1|CA|A|781
4V5S|1|CA|A|782
4V5S|1|CA|C|783
*
4V5S|1|CA|G|799
4V5S|1|CA|G|800
4V5S|1|CA|U|801
4V5S|1|CA|A|802
4V5S|1|CA|G|803

Current chains

Chain CA
16S RRNA

Nearby chains

Chain CK
30S RIBOSOMAL PROTEIN S11
Chain DA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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