IL_4V5S_225

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5S_225 not in the Motif Atlas

Homologous match to IL_4LFB_063

Geometric discrepancy: 0.1402

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V5S|1|CA|G|1435
4V5S|1|CA|U|1436
4V5S|1|CA|C|1437
*
4V5S|1|CA|G|1464
4V5S|1|CA|C|1465
4V5S|1|CA|C|1466

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CT

30S RIBOSOMAL PROTEIN S20

Chain DT

50S RIBOSOMAL PROTEIN L19