IL_4V5S_268

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGC*GUAAG

Length

11 nucleotides

Bulged bases

4V5S|1|DA|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5S_268 not in the Motif Atlas

Geometric match to IL_4V9F_056

Geometric discrepancy: 0.3741

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V5S|1|DA|C|1202
4V5S|1|DA|G|1203
4V5S|1|DA|A|1204
4V5S|1|DA|U|1205
4V5S|1|DA|G|1206
4V5S|1|DA|C|1207
*
4V5S|1|DA|G|1239
4V5S|1|DA|U|1240
4V5S|1|DA|A|1241
4V5S|1|DA|A|1242
4V5S|1|DA|G|1243

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DP

50S RIBOSOMAL PROTEIN L15