IL_4V5S_338

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAUC*GAUAG

Length

11 nucleotides

Bulged bases

4V5S|1|BA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5S_338 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3585

The information below is about IL_4WFL_001

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V5S|1|BA|C|280
4V5S|1|BA|G|281
4V5S|1|BA|A|282
4V5S|1|BA|A|283
4V5S|1|BA|U|284
4V5S|1|BA|C|285
*
4V5S|1|BA|G|356
4V5S|1|BA|A|357
4V5S|1|BA|U|358
4V5S|1|BA|A|359
4V5S|1|BA|G|360

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains