3D structure

PDB id
4V5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UGCAUGG*UCAGCAUG
Length
15 nucleotides
Bulged bases
4V5S|1|CA|C|1054, 4V5S|1|CA|A|1201
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V5S_353 not in the Motif Atlas
Geometric match to IL_4V88_510
Geometric discrepancy: 0.1372
The information below is about IL_4V88_510
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_62984.1
Basepair signature
cWW-tHS-tWH-cWH-cWW-L-L-cWW
Number of instances in this motif group
1

Unit IDs

4V5S|1|CA|U|1052
4V5S|1|CA|G|1053
4V5S|1|CA|C|1054
4V5S|1|CA|A|1055
4V5S|1|CA|U|1056
4V5S|1|CA|G|1057
4V5S|1|CA|G|1058
*
4V5S|1|CA|U|1199
4V5S|1|CA|C|1200
4V5S|1|CA|A|1201
4V5S|1|CA|G|1202
4V5S|1|CA|C|1203
4V5S|1|CA|A|1204
4V5S|1|CA|U|1205
4V5S|1|CA|G|1206

Current chains

Chain CA
16S RRNA

Nearby chains

Chain CC
30S RIBOSOMAL PROTEIN S3
Chain CJ
30S RIBOSOMAL PROTEIN S10
Chain CN
30S RIBOSOMAL PROTEIN S14
Chain CX
MRNA
Chain CY
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.289 s