Loop IL_4V5S

3D structure

PDB id: 4V5S (explore in PDB, NAKB, or RNA 3D Hub)
Description: The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: AUAGCUCAGUCGGUAGAGCAGG*CCGUGUCCUUGGUUCGAUUCCGAGU
Length: 47 nucleotides
Bulged bases: 4V5S|1|CW|C|17, 4V5S|1|CW|U|47
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5S|1|CW|A|7
4V5S|1|CW|U|8
4V5S|1|CW|A|9
4V5S|1|CW|G|10
4V5S|1|CW|C|11
4V5S|1|CW|U|12
4V5S|1|CW|C|13
4V5S|1|CW|A|14
4V5S|1|CW|G|15
4V5S|1|CW|U|16
4V5S|1|CW|C|17
4V5S|1|CW|G|18
4V5S|1|CW|G|19
4V5S|1|CW|U|20
4V5S|1|CW|A|21
4V5S|1|CW|G|22
4V5S|1|CW|A|23
4V5S|1|CW|G|24
4V5S|1|CW|C|25
4V5S|1|CW|A|26
4V5S|1|CW|G|27
4V5S|1|CW|G|28
*
4V5S|1|CW|C|42
4V5S|1|CW|C|43
4V5S|1|CW|G|44
4V5S|1|CW|U|45
4V5S|1|CW|G|46
4V5S|1|CW|U|47
4V5S|1|CW|C|48
4V5S|1|CW|C|49
4V5S|1|CW|U|50
4V5S|1|CW|U|51
4V5S|1|CW|G|52
4V5S|1|CW|G|53
4V5S|1|CW|U|54
4V5S|1|CW|U|55
4V5S|1|CW|C|56
4V5S|1|CW|G|57
4V5S|1|CW|A|58
4V5S|1|CW|U|59
4V5S|1|CW|U|60
4V5S|1|CW|C|61
4V5S|1|CW|C|62
4V5S|1|CW|G|63
4V5S|1|CW|A|64
4V5S|1|CW|G|65
4V5S|1|CW|U|66

Current chains

Chain CW: E-SITE TRNA PHE OR P-SITE TRNA PHE

Nearby chains

Chain CG: 30S RIBOSOMAL PROTEIN S7
Chain CK: 30S RIBOSOMAL PROTEIN S11
Chain D6: 50S RIBOSOMAL PROTEIN L33
Chain DA: Large subunit ribosomal RNA; LSU rRNA
Chain DC: 50S RIBOSOMAL PROTEIN L1

IL_4V5S_355