IL_4V5S_363

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCGGCGAAGACAGCCA*UGGUCGAGUGGCG

Length

30 nucleotides

Bulged bases

4V5S|1|DA|A|1045, 4V5S|1|DA|A|1046, 4V5S|1|DA|A|1111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5S|1|DA|C|1038
4V5S|1|DA|G|1039
4V5S|1|DA|C|1040
4V5S|1|DA|G|1041
4V5S|1|DA|G|1042
4V5S|1|DA|C|1043
4V5S|1|DA|G|1044
4V5S|1|DA|A|1045
4V5S|1|DA|A|1046
4V5S|1|DA|G|1047
4V5S|1|DA|A|1048
4V5S|1|DA|C|1049
4V5S|1|DA|A|1050
4V5S|1|DA|G|1051
4V5S|1|DA|C|1052
4V5S|1|DA|C|1053
4V5S|1|DA|A|1054
*
4V5S|1|DA|U|1105
4V5S|1|DA|G|1106
4V5S|1|DA|G|1107
4V5S|1|DA|U|1108
4V5S|1|DA|C|1109
4V5S|1|DA|G|1110
4V5S|1|DA|A|1111
4V5S|1|DA|G|1112
4V5S|1|DA|U|1113
4V5S|1|DA|G|1114
4V5S|1|DA|G|1115
4V5S|1|DA|C|1116
4V5S|1|DA|G|1117

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DH

50S RIBOSOMAL PROTEIN L6

Chain DJ

50S RIBOSOMAL PROTEIN L10

Chain DZ

50S RIBOSOMAL PROTEIN L25