IL_4V5Y_102

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Y_102 not in the Motif Atlas

Homologous match to IL_5J7L_273

Geometric discrepancy: 0.1799

The information below is about IL_5J7L_273

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V5Y|1|BB|U|870
4V5Y|1|BB|U|871
4V5Y|1|BB|U|872
*
4V5Y|1|BB|A|905
4V5Y|1|BB|U|906
4V5Y|1|BB|G|907

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BM

50S ribosomal protein L16