IL_4V5Y_197

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

4V5Y|1|CA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V5Y_197 not in the Motif Atlas

Homologous match to IL_4LFB_016

Geometric discrepancy: 0.0902

The information below is about IL_4LFB_016

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

4V5Y|1|CA|U|375
4V5Y|1|CA|G|376
*
4V5Y|1|CA|U|387
4V5Y|1|CA|G|388
4V5Y|1|CA|A|389

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16